Sometimes the dust cover not latching closed has to do with the detent and spring on the ejection port cover, seen that a few times. If that was my rifle, I shoot it, and enjoy it.
I was thinking about it, is it possible that since ruger is making several calibers on the ar556 platform that require larger ports like the 450 bushmaster, or 350 legend that they are making all the uppers with wider ports to save money since it doesn't effect function? The 450 requires a bigger opening to allow proper ejection. Just a thought. Or if they aren't it could be that a 450 opened upper receiver made its way on to a 5.56 rifles, very hard to tell the difference unless you use a micrometer on it to double check.
However either way it won't effect its function. Run the bolt carrier literally wet with lube for a couple hundred rounds until it breaks in. Thats how I run mine, the whole battalion of them.